Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ26842.1Hypothetical protein. (117 aa)    
Predicted Functional Partners:
EAQ26157.1
Hypothetical protein.
  
     0.562
EAQ26712.1
Hypothetical protein.
  
     0.490
EAQ24343.1
Hypothetical protein.
  
     0.472
EAQ23876.1
Hypothetical protein.
  
     0.454
EAQ23731.1
Hypothetical protein; COG2771 DNA-binding HTH domain-containing proteins.
  
     0.410
EAQ26838.1
DNA methylase N-4/N-6; COG1475 Predicted transcriptional regulators; Belongs to the N(4)/N(6)-methyltransferase family.
       0.409
EAQ26839.1
Hypothetical protein.
       0.409
EAQ26840.1
Hypothetical protein.
       0.409
EAQ26841.1
COG3747 Phage terminase, small subunit.
       0.409
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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