Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ26906.1COG0534 Na+-driven multidrug efflux pump. (468 aa)    
Predicted Functional Partners:
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
 
  0.668
EAQ25462.1
ATP-dependent helicase HrpB; COG1643 HrpA-like helicases.
     
  0.661
EAQ24261.1
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
    0.617
EAQ27111.1
Hypothetical protein; COG1562 Phytoene/squalene synthetase.
   
    0.589
EAQ27317.1
Squalene/phytoene synthase; COG1562 Phytoene/squalene synthetase.
   
    0.589
EAQ26382.1
WD domain/cytochrome c family protein; COG2319 FOG: WD40 repeat.
   
  0.587
EAQ24288.1
Hypothetical protein.
    
  0.581
EAQ26905.1
Hypothetical protein; COG0665 Glycine/D-amino acid oxidases (deaminating).
   
   0.556
EAQ26904.1
COG1960 Acyl-CoA dehydrogenases.
       0.535
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.529
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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