Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ27178.1Hypothetical protein. (337 aa)    
Predicted Functional Partners:
EAQ22820.1
Hypothetical protein; COG0272 NAD-dependent DNA ligase (contains BRCT domain type II).
  
  0.793
EAQ24609.1
core-2/I-branching enzyme family protein.
  
     0.765
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
       0.763
EAQ24610.1
Hypothetical protein.
  
     0.756
EAQ27164.1
Hypothetical protein.
  
 
   0.753
EAQ26307.1
Membrane protein, putative.
  
     0.750
EAQ24559.1
Hypothetical protein.
  
     0.733
EAQ24608.1
Hypothetical protein.
  
     0.733
EAQ23517.1
COG3409 Putative peptidoglycan-binding domain-containing protein.
  
     0.730
EAQ24114.1
Hypothetical protein.
  
  0.727
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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