EAQ27306.1 protein (Roseovarius sp. 217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EAQ27306.1

LHI beta, Light-harvesting B875 subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (49 aa)

Predicted Functional Partners:

EAQ27303.1

0.999

EAQ27304.1

0.999

EAQ27305.1

0.999

EAQ27293.1

0.998

EAQ27302.1

0.998

EAQ27307.1

0.944

EAQ27308.1

0.915

EAQ27309.1

0.867

acsF

0.845

EAQ27315.1

0.840

Your Current Organism:

Roseovarius sp. 217

NCBI taxonomy Id: 314264
Other names: R. sp. 217

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ27293.1	EAQ27302.1	ROS217_22242	ROS217_22287	COG3861 Uncharacterized protein conserved in bacteria.	Hypothetical protein; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.	0.999
EAQ27293.1	EAQ27303.1	ROS217_22242	ROS217_22292	COG3861 Uncharacterized protein conserved in bacteria.	PufM, photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.999
EAQ27293.1	EAQ27304.1	ROS217_22242	ROS217_22297	COG3861 Uncharacterized protein conserved in bacteria.	PufL, Photosynthetic reaction center L subunit.	0.999
EAQ27293.1	EAQ27305.1	ROS217_22242	ROS217_22302	COG3861 Uncharacterized protein conserved in bacteria.	LHI alpha, Light-harvesting B875 protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.999
EAQ27293.1	EAQ27306.1	ROS217_22242	ROS217_22307	COG3861 Uncharacterized protein conserved in bacteria.	LHI beta, Light-harvesting B875 subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.998
EAQ27293.1	EAQ27307.1	ROS217_22242	ROS217_22312	COG3861 Uncharacterized protein conserved in bacteria.	Protein pufQ; Required for bacteriochlorophyll biosynthesis. Directly involved in the assembly of both the B875 and B800-850 pigment-protein complexes.	0.939
EAQ27293.1	EAQ27308.1	ROS217_22242	ROS217_22317	COG3861 Uncharacterized protein conserved in bacteria.	Putative chlorophyllide reductase, BchZ subunit; COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains.	0.906
EAQ27293.1	EAQ27309.1	ROS217_22242	ROS217_22322	COG3861 Uncharacterized protein conserved in bacteria.	Chlorophyllide reductase, BchY subunit; COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains.	0.826
EAQ27293.1	EAQ27315.1	ROS217_22242	ROS217_22352	COG3861 Uncharacterized protein conserved in bacteria.	Hydroxyneurosporene dehydrogenase.	0.778
EAQ27293.1	acsF	ROS217_22242	ROS217_22262	COG3861 Uncharacterized protein conserved in bacteria.	Hypothetical protein; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family.	0.958
EAQ27302.1	EAQ27293.1	ROS217_22287	ROS217_22242	Hypothetical protein; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.	COG3861 Uncharacterized protein conserved in bacteria.	0.999
EAQ27302.1	EAQ27303.1	ROS217_22287	ROS217_22292	Hypothetical protein; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.	PufM, photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.999
EAQ27302.1	EAQ27304.1	ROS217_22287	ROS217_22297	Hypothetical protein; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.	PufL, Photosynthetic reaction center L subunit.	0.999
EAQ27302.1	EAQ27305.1	ROS217_22287	ROS217_22302	Hypothetical protein; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.	LHI alpha, Light-harvesting B875 protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.999
EAQ27302.1	EAQ27306.1	ROS217_22287	ROS217_22307	Hypothetical protein; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.	LHI beta, Light-harvesting B875 subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.998
EAQ27302.1	EAQ27307.1	ROS217_22287	ROS217_22312	Hypothetical protein; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.	Protein pufQ; Required for bacteriochlorophyll biosynthesis. Directly involved in the assembly of both the B875 and B800-850 pigment-protein complexes.	0.956
EAQ27302.1	EAQ27308.1	ROS217_22287	ROS217_22317	Hypothetical protein; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.	Putative chlorophyllide reductase, BchZ subunit; COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains.	0.933
EAQ27302.1	EAQ27309.1	ROS217_22287	ROS217_22322	Hypothetical protein; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.	Chlorophyllide reductase, BchY subunit; COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains.	0.805
EAQ27302.1	EAQ27315.1	ROS217_22287	ROS217_22352	Hypothetical protein; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.	Hydroxyneurosporene dehydrogenase.	0.767
EAQ27302.1	acsF	ROS217_22287	ROS217_22262	Hypothetical protein; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.	Hypothetical protein; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family.	0.561