Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ27488.1Hypothetical protein. (70 aa)    
Predicted Functional Partners:
EAQ27489.1
Hypothetical protein.
       0.773
EAQ27490.1
ParB-like nuclease domain protein; COG1475 Predicted transcriptional regulators.
       0.762
EAQ27491.1
Transposase, putative; COG2801 Transposase and inactivated derivatives.
       0.762
EAQ27492.1
Prophage MuMc02, transposition protein B; COG0464 ATPases of the AAA+ class.
       0.708
EAQ27493.1
Hypothetical protein.
       0.708
EAQ27494.1
Hypothetical protein.
       0.708
EAQ27495.1
Hypothetical protein.
       0.708
EAQ27496.1
Hypothetical protein.
       0.708
EAQ27497.1
Hypothetical protein.
       0.708
EAQ27498.1
COG4382 Mu-like prophage protein gp16.
       0.708
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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