Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ27512.1Hypothetical protein. (121 aa)    
Predicted Functional Partners:
EAQ27511.1
Hypothetical protein.
       0.817
EAQ27513.1
Hypothetical protein.
       0.770
EAQ27514.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
       0.714
EAQ27515.1
COG4387 Mu-like prophage protein gp36.
       0.604
EAQ27516.1
Hypothetical protein.
       0.594
EAQ27510.1
Virion morphogenesis protein; COG5005 Mu-like prophage protein gpG.
       0.520
EAQ27518.1
Putative orphan protein.
       0.459
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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