Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ23139.1Putative cytochrome c-type biogenesis protein, cycH; COG4235 Cytochrome c biogenesis factor. (410 aa)    
Predicted Functional Partners:
EAQ27132.1
Cytochrome c-type biogenesis protein CcmF; COG1138 Cytochrome c biogenesis factor.
  
 
 0.859
EAQ23141.1
COG3313 Predicted Fe-S protein.
 
     0.847
EAQ23140.1
Hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
 
     0.839
EAQ27200.1
Probable thiol-disulfide interchange protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
  
 0.755
EAQ24644.1
HemY domain protein; COG3071 Uncharacterized enzyme of heme biosynthesis.
  
     0.692
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.663
EAQ24428.1
COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
    
 0.661
EAQ26966.1
Hypothetical protein.
  
    0.598
EAQ27131.1
Cytochrome c maturation protein, CcmH; Possible subunit of a heme lyase.
 
  
 0.592
EAQ23137.1
COG4311 Sarcosine oxidase delta subunit.
       0.543
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
Server load: medium (44%) [HD]