STRINGSTRING
R2601_00055 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_00055" - Putative dehydrogenase protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_00055Putative dehydrogenase protein (309 aa)    
Predicted Functional Partners:
R2601_00255
FAD linked oxidase (946 aa)
   
 
  0.938
R2601_14750
NADP-dependent malic enzyme (751 aa)
   
  0.902
R2601_10082
Malic enzyme (759 aa)
   
  0.902
R2601_08371
Dihydrolipoamide acetyltransferase (461 aa)
   
 
  0.825
R2601_01365
Serine--glyoxylate transaminase, putative (395 aa)
 
 
  0.817
R2601_17664
Serine--glyoxylate transaminase, putative (399 aa)
 
 
  0.810
R2601_22621
L-lactate dehydrogenase, putative (388 aa)
   
 
  0.806
R2601_06423
L-lactate dehydrogenase (380 aa)
   
 
  0.806
R2601_01758
Putative L-lactate dehydrogenase (423 aa)
   
 
  0.806
R2601_25931
MOFRL (423 aa)
 
 
  0.797
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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