STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU47946.1Hypothetical protein; COG1082 Sugar phosphate isomerases/epimerases. (270 aa)    
Predicted Functional Partners:
EAU47945.1
COG2376 Dihydroxyacetone kinase.
 
   
 0.836
EAU47943.1
Putative transketolase beta subunit protein; COG1154 Deoxyxylulose-5-phosphate synthase.
 
     0.708
EAU48153.1
Oxidoreductase, Gfo/Idh/MocA family protein; COG0673 Predicted dehydrogenases and related proteins.
  
 
 0.686
EAU47944.1
Putative transketolase alpha subunit protein; COG3959 Transketolase, N-terminal subunit.
 
     0.682
EAU48001.1
Putative oxidoreductase protein; COG0673 Predicted dehydrogenases and related proteins.
 
 
  0.682
EAU47039.1
Endo-1,3-1,4-beta-glycanase; COG2273 Beta-glucanase/Beta-glucan synthetase.
  
    0.663
EAU47200.1
Putative d-galactose 1-dehydrogenase protein; COG0673 Predicted dehydrogenases and related proteins.
  
 
 0.613
EAU44778.1
Predicted oxidoreductase, Gfo/Idh/MocA family protein; COG0673 Predicted dehydrogenases and related proteins.
  
 
  0.608
EAU47165.1
Putative oxidoreductase myo-inositol 2-dehydrogenase; COG0673 Predicted dehydrogenases and related proteins.
  
 
  0.608
EAU47173.1
Oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
  
 
  0.608
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.