STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU47996.1COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit; Belongs to the RuBisCO large chain family. (421 aa)    
Predicted Functional Partners:
EAU46929.1
COG4451 Ribulose bisphosphate carboxylase small subunit.
 
 0.998
EAU46935.1
COG3954 Phosphoribulokinase.
 
 
 0.930
EAU45354.1
Bacterial transferase family protein; COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily.
    
 
 0.898
EAU48002.1
Hypothetical protein.
 
     0.868
EAU48001.1
Putative oxidoreductase protein; COG0673 Predicted dehydrogenases and related proteins.
 
     0.818
pgk
COG0126 3-phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.810
pgk-2
COG0126 3-phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.810
EAU47998.1
Hypothetical protein; COG5618 Predicted periplasmic lipoprotein.
 
     0.802
EAU48005.1
Hypothetical protein; COG0345 Pyrroline-5-carboxylate reductase.
 
   
 0.802
EAU48004.1
COG3395 Uncharacterized protein conserved in bacteria.
 
     0.790
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.