STRINGSTRING
R2601_01903 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_01903" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_01903Uncharacterized protein (188 aa)    
Predicted Functional Partners:
R2601_01908
Putative signal peptide protein (193 aa)
 
          0.980
R2601_01898
TRAP-type C4-dicarboxylate transport system, large permease component (437 aa)
 
          0.942
R2601_17439
Bacterial extracellular solute-binding protein, family 7 (323 aa)
 
          0.852
R2601_01913
TRAP-T family transporter, periplasmic binding protein (124 aa)
   
          0.773
R2601_17429
TRAP dicarboxylate family transporter, DctM subunit (437 aa)
 
          0.712
R2601_19929
Putative ABC transporter periplasmic solute-binding protein (324 aa)
   
          0.683
R2601_01265
TRAP transporter, DctQ family protein (181 aa)
   
          0.619
R2601_05688
Uncharacterized protein (215 aa)
   
          0.554
R2601_01893
Uncharacterized protein (52 aa)
 
          0.520
R2601_17434
Uncharacterized protein (176 aa)
   
          0.511
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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