STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU48326.1COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (301 aa)    
Predicted Functional Partners:
EAU48323.1
Hypothetical protein; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
     0.818
EAU48322.1
OPINE OXIDASE SUBUNIT A; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
     0.812
EAU48324.1
COG0146 N-methylhydantoinase B/acetone carboxylase, alpha subunit.
 
     0.762
EAU48327.1
Sarcosine oxidase, subunit beta; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
     0.757
EAU44906.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.722
EAU44705.1
Probable LysR-family transcriptional activator; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.661
EAU48325.1
COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit.
 
     0.653
EAU47393.1
Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.615
EAU48424.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.588
EAU48342.1
Hypothetical protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.585
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.