STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU48329.1Putative AsnC (lrp)-family transcriptional activator; COG1522 Transcriptional regulators. (164 aa)    
Predicted Functional Partners:
EAU44181.1
Transcriptional regulator, AsnC family protein; COG1522 Transcriptional regulators.
  
     0.766
EAU48328.1
agaE protein, conversion of agropinic acid to mannopinic acid; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
     0.652
EAU45644.1
Transcriptional regulator, AsnC family protein; COG1522 Transcriptional regulators.
  
     0.584
EAU48340.1
Haloalkanoic acid dehalogenase; COG1011 Predicted hydrolase (HAD superfamily).
  
  
  0.479
EAU48334.1
Hypothetical protein; COG1011 Predicted hydrolase (HAD superfamily).
  
  
  0.467
EAU48342.1
Hypothetical protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.449
EAU48337.1
Hypothetical protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.431
EAU48341.1
Probable FAD-dependent oxidoreductase protein; COG0665 Glycine/D-amino acid oxidases (deaminating).
  
     0.429
EAU48323.1
Hypothetical protein; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
  
     0.411
EAU48333.1
Probable oligopeptide ABC transporter, substrate-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
  
     0.411
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.