STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU48387.1Hypothetical protein; COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold. (286 aa)    
Predicted Functional Partners:
EAU48386.1
COG1960 Acyl-CoA dehydrogenases.
    
  0.715
EAU46157.1
Possible dioxygenase reductase subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
    
  0.714
EAU47722.1
COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
    
  0.714
EAU44703.1
Possible dioxygenase reductase subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
    
  0.714
EAU46778.1
feruloyl-CoA synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
   
 0.671
EAU48385.1
Binding-protein-dependent transport systems inner membrane component; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.668
EAU46772.1
COG1846 Transcriptional regulators.
 
     0.614
EAU46777.1
COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
     0.519
EAU47716.1
COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
 
  
  0.492
EAU48480.1
Glyoxalase family protein; COG2514 Predicted ring-cleavage extradiol dioxygenase.
    
 0.479
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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