STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU48440.1Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (376 aa)    
Predicted Functional Partners:
EAU48441.1
Hydrophobe/amphiphile efflux-1 family protein; COG0841 Cation/multidrug efflux pump.
 0.991
EAU45135.1
Cation/multidrug efflux pump, RND family protein; COG0841 Cation/multidrug efflux pump.
 0.962
EAU47378.1
Probable multidrug efflux transporter protein; COG0841 Cation/multidrug efflux pump.
 0.957
EAU45879.1
COG0841 Cation/multidrug efflux pump.
 0.957
EAU46976.1
Type I secretion outer membrane protein, TolC family; COG1538 Outer membrane protein.
 
 0.953
EAU45281.1
COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.949
EAU45878.1
COG1538 Outer membrane protein.
 
 0.910
EAU47380.1
COG1538 Outer membrane protein.
 
 0.901
EAU47155.1
Transporter, AcrB/AcrD/AcrF family protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.873
EAU48061.1
Transporter, AcrB/AcrD/AcrF family protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.822
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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