STRINGSTRING
R2601_02668 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02668" - Efflux transporter, RND family, MFP subunit in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02668Efflux transporter, RND family, MFP subunit (376 aa)    
Predicted Functional Partners:
R2601_02673
Hydrophobe/amphiphile efflux-1 family protein (1053 aa)
 
  0.998
R2601_21452
RND multidrug efflux transporter (1041 aa)
 
  0.990
R2601_21241
Probable multidrug efflux transporter protein (1037 aa)
 
  0.990
R2601_12795
Cation/multidrug efflux pump, RND family protein (1044 aa)
 
  0.990
R2601_21447
Nodulation protein (453 aa)
 
  0.984
R2601_21251
Nodulation protein T (377 aa)
 
  0.984
R2601_05513
Transporter, AcrB/AcrD/AcrF family protein (1016 aa)
 
  0.971
R2601_17619
Type I secretion outer membrane protein, TolC family (468 aa)
 
  0.969
R2601_13885
Transporter, AcrB/AcrD/AcrF family protein (1129 aa)
 
  0.965
R2601_26331
Transporter, AcrB/AcrD/AcrF family protein (1236 aa)
   
  0.957
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]