STRINGSTRING
R2601_02998 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_02998" - Isomerase/lactonizing enzyme in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_02998Isomerase/lactonizing enzyme (382 aa)    
Predicted Functional Partners:
R2601_03003
ABC transporter, substrate binding protein (Oligopeptide) (521 aa)
 
          0.920
R2601_20751
Putative dihydrodipicolinate synthetase (293 aa)
 
 
  0.788
R2601_02478
Dihydrodipicolinate synthase (295 aa)
 
 
  0.758
R2601_03218
Putative 5-dehydro-4-deoxyglucarate dehydratase (155 aa)
 
 
  0.744
R2601_03203
Uncharacterized protein (237 aa)
 
 
    0.730
R2601_13139
3-oxoadipate enol-lactone hydrolase (262 aa)
 
 
  0.729
R2601_03158
ABC transporter, substrate binding protein (Sugar) (120 aa)
 
     
  0.727
R2601_15985
Adenylate/guanylate cyclase/hydrolase, alpha/beta fold family protein (507 aa)
   
 
  0.708
R2601_21291
Hydrolase, alpha/beta fold family protein (254 aa)
   
 
  0.693
R2601_20921
Uncharacterized protein (246 aa)
   
 
  0.693
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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