STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU48506.1Isomerase/lactonizing enzyme; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (382 aa)    
Predicted Functional Partners:
EAU48507.1
ABC transporter, substrate binding protein (oligopeptide); COG0747 ABC-type dipeptide transport system, periplasmic component.
     0.878
EAU44812.1
COG2721 Altronate dehydratase.
 
  
 0.733
EAU48508.1
Hypothetical protein; COG1073 Hydrolases of the alpha/beta superfamily.
  
     0.674
EAU48548.1
Hypothetical protein; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.
 
  
 
0.665
EAU45441.1
Putative aldolase; COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.621
EAU48550.1
Putative 5-dehydro-4-deoxyglucarate dehydratase; COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase.
 
  
  0.603
EAU48547.1
Hypothetical protein; COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
 0.505
EAU43439.1
4-hydroxy-4-methyl-2-oxoglutarate aldolase, putative; COG0684 Demethylmenaquinone methyltransferase.
 
 
  0.490
EAU46183.1
COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.
    
 0.476
EAU47723.1
COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.
    
 0.476
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.