STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU48716.1COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family. (297 aa)    
Predicted Functional Partners:
EAU48715.1
COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
    
  0.833
EAU46447.1
Hypothetical protein.
 
 
 0.812
EAU48714.1
FadE12_1; COG1960 Acyl-CoA dehydrogenases.
  
 
  0.796
EAU46396.1
COG0281 Malic enzyme.
  
 
 0.769
EAU48234.1
COG0281 Malic enzyme.
  
 
 0.769
EAU43745.1
Hypothetical protein; COG2030 Acyl dehydratase.
  
 
 0.615
EAU46446.1
Probable ring-cleaving dioxygenase; COG0346 Lactoylglutathione lyase and related lyases.
  
  
 0.614
EAU48413.1
Hypothetical protein; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
   
    0.601
EAU48425.1
Hypothetical protein; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
   
    0.601
EAU46943.1
Rhamnulose-1-phosphate aldolase; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
   
    0.601
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.