STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
EAU47197.1Smp-30/Cgr1 family protein; COG3386 Gluconolactonase. (282 aa)    
Predicted Functional Partners:
EAU47196.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
  
 0.905
EAU47200.1
Putative d-galactose 1-dehydrogenase protein; COG0673 Predicted dehydrogenases and related proteins.
 
 
 0.848
EAU47201.1
Dihydroxy-acid dehydratase protein; COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
 
  
 0.811
EAU46143.1
ABC transporter related protein; COG1129 ABC-type sugar transport system, ATPase component; Belongs to the binding-protein-dependent transport system permease family.
    
  0.694
EAU47199.1
COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Belongs to the DapA family.
 
     0.634
EAU47644.1
Hypothetical protein; COG3386 Gluconolactonase.
  
  
  0.634
EAU45016.1
COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
 
   
 0.626
EAU47198.1
Dehydrogenase; COG1012 NAD-dependent aldehyde dehydrogenases.
 
   
 0.615
EAU45010.1
COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
 
  
 0.607
EAU48153.1
Oxidoreductase, Gfo/Idh/MocA family protein; COG0673 Predicted dehydrogenases and related proteins.
  
 
 0.588
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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