STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU47242.1ABC transporter component; COG1122 ABC-type cobalt transport system, ATPase component. (216 aa)    
Predicted Functional Partners:
EAU47243.1
COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters.
 
 0.999
EAU47245.1
Cobalamin (vitamin B12) biosynthesis CbiM protein; COG0310 ABC-type Co2+ transport system, permease component.
 
 0.999
EAU45314.1
bioY family protein.
   
 0.996
EAU47246.1
Hypothetical protein; COG5266 ABC-type Co2+ transport system, periplasmic component.
 
  
 0.995
EAU47244.1
Hypothetical protein.
 
     0.955
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.796
EAU43465.1
Hypothetical protein.
  
    0.739
EAU47232.1
precorrin-8X methylmutase; COG2082 Precorrin isomerase.
 
 
 0.707
EAU47236.1
precorrin-6Y C5,15-methyltransferase (decarboxylating); COG2241 Precorrin-6B methylase 1.
  
 
 0.703
EAU44785.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
0.638
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.