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R2601_05948 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_05948" - ABC transporter component in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_05948ABC transporter component (216 aa)    
Predicted Functional Partners:
R2601_05953
Cobalt transport protein (260 aa)
 
  0.999
R2601_05958
Uncharacterized protein (195 aa)
 
   
    0.996
R2601_05963
Cobalamin (Vitamin B12) biosynthesis CbiM protein (203 aa)
 
   
  0.994
R2601_05968
Uncharacterized protein (261 aa)
 
   
    0.994
R2601_24699
BioY family protein (208 aa)
       
  0.861
R2601_05918
Precorrin-6Y C5,15-methyltransferase (Decarboxylating) (403 aa)
   
 
  0.680
R2601_05043
Sulfate/tungstate uptake family ABC transporter, periplasmic substrate-binding protein (273 aa)
       
    0.660
R2601_05033
Sulfate/tungstate uptake family ABC transporter, permease protein (241 aa)
       
    0.660
R2601_13714
Cobinamide kinase/cobinamide phosphate guanylyltransferase (168 aa)
   
        0.651
R2601_17654
Efflux ABC transporter, transmembrane ATP-binding protein (582 aa)
   
0.641
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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