STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU47259.1TRAP dicarboxylate transporter, DctQ subunit, putative; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component. (155 aa)    
Predicted Functional Partners:
EAU47260.1
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.893
EAU47258.1
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
  0.856
EAU47257.1
Hypothetical protein.
       0.712
EAU47261.1
Probable hydrolase; COG1335 Amidases related to nicotinamidase.
       0.608
EAU47256.1
COG1802 Transcriptional regulators.
       0.588
EAU47992.1
TRAP dicarboxylate transporter- DctP subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.572
EAU45442.1
COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.567
EAU47993.1
COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.560
EAU45847.1
Putative periplasmic substrate-binding protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.555
EAU43521.1
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.545
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.