STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU47276.1Hypothetical protein. (186 aa)    
Predicted Functional Partners:
EAU44544.1
Putative extracellular solute-binding protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.885
EAU47275.1
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
  0.879
EAU44728.1
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.803
EAU44726.1
TRAP dicarboxylate transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
  0.799
EAU47272.1
3-ketoacyl-(acyl-carrier-protein) reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.773
EAU47273.1
Putative NAD dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases.
       0.773
EAU47274.1
Amidohydrolase family protein; COG0402 Cytosine deaminase and related metal-dependent hydrolases.
       0.773
EAU44725.1
Hypothetical protein.
 
     0.699
EAU46940.1
Bacterial extracellular solute-binding protein, family 7; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.541
EAU46213.1
Putative signal peptide protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.515
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.