STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU44305.1Hypothetical protein; COG3436 Transposase and inactivated derivatives. (61 aa)    
Predicted Functional Partners:
EAU47619.1
Hypothetical protein; COG3436 Transposase and inactivated derivatives.
 
     0.974
EAU47833.1
Hypothetical protein; COG3436 Transposase and inactivated derivatives.
 
     0.715
EAU47816.1
COG2963 Transposase and inactivated derivatives.
 
     0.698
EAU44306.1
COG3316 Transposase and inactivated derivatives.
 
     0.630
EAU44303.1
COG2963 Transposase and inactivated derivatives.
 
     0.623
EAU47815.1
COG3436 Transposase and inactivated derivatives.
 
     0.602
EAU47893.1
COG3436 Transposase and inactivated derivatives.
 
     0.590
EAU46210.1
Hypothetical protein; COG3436 Transposase and inactivated derivatives.
  
     0.507
EAU47834.1
Hypothetical protein; COG3436 Transposase and inactivated derivatives.
 
     0.449
EAU44331.1
Hypothetical protein; COG3436 Transposase and inactivated derivatives.
 
     0.449
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.