STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU44310.1Hypothetical protein. (515 aa)    
Predicted Functional Partners:
EAU44309.1
Conjugal transfer protein; COG3505 Type IV secretory pathway, VirD4 components.
     
 0.855
EAU44308.1
Hypothetical protein; Part of the Type IV secretion system. Belongs to the GSP E family.
       0.801
EAU44307.1
COG2948 Type IV secretory pathway, VirB10 components.
       0.706
EAU44311.1
Hypothetical protein.
       0.510
EAU44306.1
COG3316 Transposase and inactivated derivatives.
       0.480
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.