STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU43638.1INTEGRASE/RECOMBINASE; COG0582 Integrase. (334 aa)    
Predicted Functional Partners:
EAU43637.1
INTEGRASE/RECOMBINASE; COG0582 Integrase.
 
     0.946
EAU43636.1
COG0582 Integrase.
 
    
0.841
EAU47895.1
INTEGRASE/RECOMBINASE; COG0582 Integrase.
  
     0.774
EAU43472.1
INTEGRASE/RECOMBINASE; COG0582 Integrase.
  
     0.774
EAU47790.1
INTEGRASE/RECOMBINASE; COG0582 Integrase.
  
     0.774
EAU47789.1
COG0582 Integrase.
  
     0.771
EAU47439.1
COG4974 Site-specific recombinase XerD.
  
     0.760
EAU47438.1
COG4974 Site-specific recombinase XerD.
  
     0.645
EAU48261.1
Competence protein F; COG1040 Predicted amidophosphoribosyltransferases.
  
    0.551
EAU43635.1
Hypothetical protein; COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
       0.545
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.