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R2601_08321 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_08321" - Periplasmic serine protease, DO/DeqQ family protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
R2601_08321Periplasmic serine protease, DO/DeqQ family protein (494 aa)    
Predicted Functional Partners:
R2601_09305
Periplasmic serine protease, DO/DeqQ family protein (462 aa)
   
   
0.802
R2601_09947
RNA polymerase sigma factor (292 aa)
 
 
  0.748
rpoH
RNA polymerase sigma-32 factor (298 aa)
   
 
  0.730
R2601_14220
Carboxyl-terminal protease family protein (448 aa)
 
   
  0.700
clpP
Endopeptidase Clp ; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (210 aa)
   
 
  0.662
rpoD
Sigma-70 ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (661 aa)
   
 
  0.657
R2601_12443
Peptidoglycan-associated lipoprotein (174 aa)
   
 
  0.637
miaA
Isopentenyl-diphosphate-tRNA isopentenyltransferase ; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) (304 aa)
 
   
  0.633
R2601_26256
Nitrogen regulation protein NtrC (457 aa)
 
   
  0.630
R2601_25081
Zinc metalloprotease (447 aa)
 
   
  0.625
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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