STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU45683.1OmpA family protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins. (221 aa)    
Predicted Functional Partners:
EAU45682.1
Bacterial type II/III secretion system protein; COG4964 Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family.
 
    0.945
tolB
Translocation protein TolB precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 0.904
EAU45681.1
CpaB family protein; COG3745 Flp pilus assembly protein CpaB.
 
     0.858
EAU45690.1
Hypothetical protein.
 
     0.842
EAU45684.1
ATPase, putative; COG0489 ATPases involved in chromosome partitioning.
 
     0.823
EAU45689.1
Lipoprotein, putative; COG0457 FOG: TPR repeat.
 
     0.816
EAU45688.1
TPR domain protein; COG0457 FOG: TPR repeat.
 
     0.787
EAU45686.1
Type II/IV secretion system protein, TadC subfamily; COG4965 Flp pilus assembly protein TadB.
 
     0.784
EAU45687.1
COG2064 Flp pilus assembly protein TadC.
 
     0.723
EAU46643.1
COG3455 Uncharacterized protein conserved in bacteria.
   
 0.708
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.