STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU46034.1COG0456 Acetyltransferases. (139 aa)    
Predicted Functional Partners:
EAU46035.1
Protease, putative; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone.
 
 
 0.932
EAU46036.1
nifU domain protein; COG0694 Thioredoxin-like proteins and domains.
       0.747
EAU46033.1
COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein.
       0.673
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.655
EAU46037.1
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
       0.570
EAU46031.1
Sugar ABC transporter, permease protein; COG4603 ABC-type uncharacterized transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
       0.521
ureB
Urease, beta subunit:Urease, gamma subunit; COG0831 Urea amidohydrolase (urease) gamma subunit; Belongs to the urease beta subunit family.
    
  0.497
EAU45589.1
DNA binding protein, putative; COG1396 Predicted transcriptional regulators.
    
 0.423
EAU43720.1
Helix-turn-helix motif; COG1396 Predicted transcriptional regulators.
    
 0.423
EAU48139.1
Dimethyl sulfoxide reductase, C subunit, putative; COG3302 DMSO reductase anchor subunit.
      
 0.422
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.