STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU44062.1COG4618 ABC-type protease/lipase transport system, ATPase and permease components. (576 aa)    
Predicted Functional Partners:
EAU44061.1
Type I secretion membrane fusion protein, HlyD family; COG0845 Membrane-fusion protein.
  
 0.964
EAU44060.1
Hypothetical protein; COG0251 Putative translation initiation inhibitor, yjgF family.
       0.729
EAU44059.1
Phosphodiesterase-like protein; COG0584 Glycerophosphoryl diester phosphodiesterase.
       0.726
EAU47294.1
Type I secretion membrane fusion protein, HlyD family; COG0845 Membrane-fusion protein.
  
 0.715
pstB
Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.706
EAU44058.1
COG3146 Uncharacterized protein conserved in bacteria.
       0.658
EAU47612.1
HlyD family secretion protein; COG0845 Membrane-fusion protein.
  
 0.657
EAU44057.1
COG2154 Pterin-4a-carbinolamine dehydratase.
       0.647
EAU45818.1
COG1126 ABC-type polar amino acid transport system, ATPase component.
 
     
0.642
EAU47025.1
Putative calcium binding hemolysin protein; COG2273 Beta-glucanase/Beta-glucan synthetase.
 
 
 
 0.634
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.