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R2601_12705 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12705" - ABC branched amino acid transporter family, periplasmic substrate-binding subunit in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12705ABC branched amino acid transporter family, periplasmic substrate-binding subunit (430 aa)    
Predicted Functional Partners:
R2601_12710
Branched-chain amino acid ABC transporter, permease protein (358 aa)
 
   
  0.990
R2601_12695
Branched-chain amino acid ABC transporter, ATP-binding protein (274 aa)
   
  0.988
R2601_12720
ABC branched amino acid transporter family, inner membrane subunit (317 aa)
 
   
  0.979
R2601_12725
Branched-chain amino acid ABC transporter, ATP-binding protein (288 aa)
   
  0.978
R2601_12685
Phenylacetate-CoA ligase, putative (406 aa)
 
          0.924
R2601_21917
Branched-chain amino acid ABC transporter, permease protein (618 aa)
       
  0.922
R2601_12730
AMP-binding enzyme (654 aa)
 
          0.899
R2601_24834
Branched-chain amino acid ABC transporter, ATP-binding protein (256 aa)
     
  0.877
R2601_20626
Branched amino acid ABC transporter (Permease) (291 aa)
       
  0.877
R2601_24829
Branched-chain amino acid ABC transporter, ATP-binding protein (274 aa)
     
    0.875
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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