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R2601_13289 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13289" - Putrescine ABC transporter, permease protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13289Putrescine ABC transporter, permease protein (296 aa)    
Predicted Functional Partners:
R2601_13284
Putrescine ABC transporter, ATP-binding protein (479 aa)
  0.999
R2601_13294
Putrescine ABC transporter, permease protein (272 aa)
 
  0.999
R2601_13279
Putrescine-binding periplasmic protein ; Required for the activity of the bacterial periplasmic transport system of putrescine (368 aa)
 
 
  0.999
R2601_11409
Probable permease of ABC transporter (268 aa)
 
  0.990
R2601_11419
Probable ATP-binding component of ABC transporter (355 aa)
  0.989
R2601_27001
Probable spermidineputrescine ABC transporter ATP-binding protein (360 aa)
  0.985
R2601_11404
Putrescine-binding periplasmic protein ; Required for the activity of the bacterial periplasmic transport system of putrescine (341 aa)
 
 
  0.981
R2601_10144
Polyamine-transporting ATPase ; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system (366 aa)
  0.980
R2601_02583
ABC transporter, ATP-binding protein (350 aa)
  0.980
R2601_01060
ABC transporter ATP-binding protein (352 aa)
  0.978
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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