STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU46463.1ABC transporter, permease protein; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component. (276 aa)    
Predicted Functional Partners:
EAU46098.1
Capsular polysaccharide export ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
 0.999
EAU46097.1
Capsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family; COG3524 Capsule polysaccharide export protein.
 
 
 0.989
EAU43850.1
COG3563 Capsule polysaccharide export protein.
 
  
 0.978
EAU43851.1
COG1596 Periplasmic protein involved in polysaccharide export.
 
  
 0.932
EAU48209.1
Putative capsule polysaccharide exporter; COG1596 Periplasmic protein involved in polysaccharide export.
 
  
 0.904
EAU46461.1
Glycosyl transferase, family 2; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.881
EAU46457.1
Hypothetical protein.
 
  
 0.860
EAU46456.1
core-2/I-branching enzyme family protein.
 
     0.850
EAU46455.1
Hypothetical protein.
 
     0.846
EAU43852.1
COG3562 Capsule polysaccharide export protein.
 
   
 0.840
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.