STRINGSTRING
R2601_16015 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_16015" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_16015Uncharacterized protein (1193 aa)    
Predicted Functional Partners:
R2601_16020
Uncharacterized protein (465 aa)
   
  0.988
R2601_16010
Uncharacterized protein (232 aa)
 
        0.984
R2601_16005
Probable phosphoprotein phosphatase (242 aa)
 
        0.964
R2601_16035
Uncharacterized protein (145 aa)
 
 
  0.935
R2601_22092
Uncharacterized protein (625 aa)
 
   
  0.920
R2601_16080
Uncharacterized protein (624 aa)
 
   
  0.920
R2601_22117
Possible outer membrane protein, OmpA family (452 aa)
 
   
  0.917
R2601_16055
Uncharacterized protein (708 aa)
 
 
  0.910
R2601_22097
Uncharacterized protein (354 aa)
 
   
  0.903
R2601_16075
Uncharacterized protein (339 aa)
 
   
  0.903
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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