STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU45266.1YeeE/YedE family protein; COG2391 Predicted transporter component. (353 aa)    
Predicted Functional Partners:
EAU43856.1
Regulatory protein SoxS; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
     0.798
EAU43858.1
COG2143 Thioredoxin-related protein.
 
     0.782
EAU43860.1
Sulfur oxidation protein SoxY; COG5501 Predicted secreted protein.
 
     0.773
EAU43861.1
Sulfur oxidation Z protein.
 
     0.768
EAU43862.1
COG3258 Cytochrome c.
 
   
 0.762
EAU43864.1
Sulfur oxidation molybdopterin C protein; COG2041 Sulfite oxidase and related enzymes.
 
   
 0.761
EAU43859.1
Monoheme cytochrome c SoxX; COG0516 IMP dehydrogenase/GMP reductase.
  
     0.753
EAU43865.1
COG3258 Cytochrome c.
 
     0.743
EAU46498.1
Hypothetical protein.
  
     0.739
EAU43863.1
Sulfur oxidation B protein; COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.
 
     0.729
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.