STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU46967.1COG1215 Glycosyltransferases, probably involved in cell wall biogenesis. (628 aa)    
Predicted Functional Partners:
EAU46966.1
Hypothetical protein; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
 
     0.947
EAU46969.1
Diguanylate cyclase; COG0784 FOG: CheY-like receiver.
 
    0.893
EAU48105.1
COG2003 DNA repair proteins; Belongs to the UPF0758 family.
 
    0.877
EAU46970.1
Two-component hybrid sensor and regulator; COG5002 Signal transduction histidine kinase.
 
  
 0.864
EAU43631.1
COG2003 DNA repair proteins; Belongs to the UPF0758 family.
  
    0.861
EAU47016.1
DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
   
    0.853
EAU46968.1
Hypothetical protein.
       0.801
EAU45301.1
Diguanylate cyclase, putative; COG2200 FOG: EAL domain.
 
 
 0.794
EAU48200.1
COG1291 Flagellar motor component.
  
    0.785
EAU46965.1
COG0643 Chemotaxis protein histidine kinase and related kinases.
       0.773
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.