STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU47009.1Saccharopine dehydrogenase, putative; COG1748 Saccharopine dehydrogenase and related proteins. (376 aa)    
Predicted Functional Partners:
EAU47008.1
Saccharopine dehydrogenase, putative; COG0686 Alanine dehydrogenase.
  
  0.969
EAU47007.1
Phosphoglycerate mutase family protein; COG0406 Fructose-2,6-bisphosphatase.
 
   
 0.719
EAU45482.1
Non-ribosomal peptide synthetase; COG0223 Methionyl-tRNA formyltransferase.
  
 
 0.634
EAU45643.1
Putative Ornithine decarboxylase; COG0019 Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
 
 0.502
EAU46479.1
Hypothetical protein; COG0421 Spermidine synthase.
    
 0.502
EAU46383.1
Predicted Orn/Lys/Arg decarboxylase; COG1982 Arginine/lysine/ornithine decarboxylases.
    
  0.496
EAU44891.1
Hypothetical protein.
  
     0.490
EAU48068.1
Hypothetical protein.
  
     0.479
carB-2
COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); Belongs to the CarB family.
     
 0.479
argH
COG0165 Argininosuccinate lyase.
 
 
  
 0.474
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.