STRINGSTRING
R2601_18173 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18173" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18173Uncharacterized protein (447 aa)    
Predicted Functional Partners:
gatB
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B ; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) (504 aa)
              0.861
R2601_21802
Uncharacterized protein (117 aa)
   
          0.778
R2601_25896
Uncharacterized protein (49 aa)
   
          0.777
R2601_26991
Uncharacterized protein (311 aa)
   
          0.776
R2601_25371
Tellurite resistance protein (134 aa)
   
          0.776
R2601_13239
CAAX amino terminal protease family protein (295 aa)
   
          0.776
R2601_23435
Lipoprotein, putative (168 aa)
   
          0.775
R2601_11169
Uncharacterized protein (80 aa)
   
          0.770
R2601_25316
Acetyltransferase, GNAT family protein (148 aa)
   
          0.768
R2601_09777
Lipoprotein, putative (226 aa)
   
          0.768
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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