STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU44666.1COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases. (275 aa)    
Predicted Functional Partners:
EAU43878.1
COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
     0.988
EAU45480.1
Non-ribosomal peptide synthase; COG3321 Polyketide synthase modules and related proteins.
   
 0.855
EAU46267.1
COG0372 Citrate synthase; Belongs to the citrate synthase family.
  
 0.831
EAU47415.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 
 0.830
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
   
 0.825
EAU47647.1
COG0372 Citrate synthase.
  
 0.813
EAU46396.1
COG0281 Malic enzyme.
  
 0.805
EAU48234.1
COG0281 Malic enzyme.
  
 0.805
EAU44348.1
Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 
 0.802
EAU44610.1
COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
    
 0.792
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.