STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU46538.1COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (290 aa)    
Predicted Functional Partners:
EAU46537.1
Cytochrome c550, putative; COG2010 Cytochrome c, mono- and diheme variants.
 
  
  0.962
EAU46535.1
Hypothetical protein.
 
  
  0.908
EAU46536.1
Hypothetical protein.
 
     0.876
EAU46534.1
Hypothetical protein; COG0790 FOG: TPR repeat, SEL1 subfamily.
 
     0.872
EAU46222.1
COG0642 Signal transduction histidine kinase.
  
 
 0.871
EAU45039.1
Sensor histidine kinase with multiple PAS and a response regulator receiver domain; COG2202 FOG: PAS/PAC domain.
   
 0.847
EAU46521.1
Chemotaxis multidomain, CheB methylesterase/CheR, Methylase; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
    
 0.844
EAU46530.1
Hypothetical protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
   
 0.838
EAU47544.1
Carbon monoxide dehydrogenase operon G protein.
 
 
  0.831
EAU46532.1
Quinoprotein ethanol dehydrogenase; COG4993 Glucose dehydrogenase.
 
  
 0.828
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.