STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU46626.1Alcohol dehydrogenase, zinc-containing; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases. (323 aa)    
Predicted Functional Partners:
EAU45480.1
Non-ribosomal peptide synthase; COG3321 Polyketide synthase modules and related proteins.
 
 0.977
EAU46625.1
Hypothetical protein.
  
   0.816
EAU45518.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
 0.644
EAU43745.1
Hypothetical protein; COG2030 Acyl dehydratase.
  
 0.598
EAU44683.1
COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.585
EAU47415.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.585
rpsU
COG0828 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.563
EAU47622.1
COG0656 Aldo/keto reductases, related to diketogulonate reductase.
 
 
 0.523
EAU45482.1
Non-ribosomal peptide synthetase; COG0223 Methionyl-tRNA formyltransferase.
  
 
 0.512
EAU44639.1
COG0331 (acyl-carrier-protein) S-malonyltransferase.
 
   
 0.476
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.