STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU47604.1COG3180 Putative ammonia monooxygenase. (348 aa)    
Predicted Functional Partners:
EAU47600.1
Probable dipeptide transmembrane abc transporter protein; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
       0.773
EAU47601.1
ABC transporter, membrane spanning protein (oligopeptide); COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
       0.773
EAU47602.1
Probable oligopeptide atp-binding abc transporter protein; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
       0.773
EAU47603.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
       0.773
EAU47598.1
Hypothetical protein; COG3509 Poly(3-hydroxybutyrate) depolymerase.
       0.714
EAU47599.1
COG0405 Gamma-glutamyltransferase.
       0.714
EAU44772.1
Membrane protein TctB, putative.
 
    0.621
EAU47597.1
Extracellular solute-binding protein, family 5; COG0747 ABC-type dipeptide transport system, periplasmic component.
 
     0.586
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.