STRINGSTRING
R2601_19829 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_19829" - Putative transporter (Formate/nitrite transporter family) protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_19829Putative transporter (Formate/nitrite transporter family) protein (277 aa)    
Predicted Functional Partners:
R2601_06388
Putative ferredoxin (113 aa)
 
   
  0.574
R2601_08191
Nitrite reductase small subunit (110 aa)
   
   
  0.506
R2601_08186
BFD-like (2Fe-2S)-binding region (721 aa)
   
   
  0.494
R2601_08181
BFD-like (2Fe-2S)-binding region (80 aa)
   
   
  0.494
R2601_22596
Trimethylamine-N-oxide reductase (Cytochrome c) (750 aa)
         
  0.471
R2601_14290
Oxidoreductase, molybdopterin-binding protein (935 aa)
         
  0.471
R2601_08196
Nitrate reductase large subunit protein (876 aa)
         
  0.471
R2601_05078
Formate dehydrogenase, alpha subunit, putative (971 aa)
         
  0.471
R2601_22057
Serine/Threonine protein kinase (707 aa)
   
        0.461
R2601_16115
Serine/threonine protein kinase (445 aa)
   
        0.461
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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