STRINGSTRING
R2601_20069 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20069" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20069Uncharacterized protein (483 aa)    
Predicted Functional Partners:
R2601_20064
Probable enoyl-CoA hydratase/isomerase (253 aa)
              0.859
R2601_20059
Uncharacterized protein (287 aa)
              0.859
R2601_20054
CoA-binding protein (706 aa)
              0.859
R2601_20049
Thiolase (384 aa)
              0.859
R2601_20044
Uncharacterized protein (126 aa)
              0.859
R2601_20034
Acyl-CoA dehydrogenase (384 aa)
              0.784
R2601_20039
Phenylacetic acid degradation-related protein (139 aa)
              0.783
R2601_20029
Probable transcriptional regulator (258 aa)
 
          0.672
R2601_20024
Probable short-chain dehydrogenase (306 aa)
              0.499
R2601_25391
Uncharacterized protein (137 aa)
   
          0.494
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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