STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU47669.1Hypothetical protein; COG1079 Uncharacterized ABC-type transport system, permease component. (483 aa)    
Predicted Functional Partners:
EAU47664.1
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
 
     0.856
EAU47667.1
Hypothetical protein; COG2030 Acyl dehydratase.
 
     0.813
EAU47665.1
Thiolase; COG0183 Acetyl-CoA acetyltransferase.
 
     0.809
EAU47666.1
CoA-binding protein; COG1042 Acyl-CoA synthetase (NDP forming).
 
     0.809
EAU47668.1
Probable enoyl-CoA hydratase/isomerase; COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.774
EAU47663.1
Phenylacetic acid degradation-related protein; COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
       0.705
EAU47662.1
COG1960 Acyl-CoA dehydrogenases.
       0.701
EAU48600.1
Hypothetical protein; COG0471 Di- and tricarboxylate transporters.
  
     0.674
EAU47661.1
COG1414 Transcriptional regulator.
 
     0.632
EAU47671.1
Possible TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein; COG2358 TRAP-type uncharacterized transport system, periplasmic component.
  
     0.580
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.