STRINGSTRING
R2601_20129 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20129" - ABC transporter, inner membrane subunit in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20129ABC transporter, inner membrane subunit (254 aa)    
Predicted Functional Partners:
R2601_20124
ABC transporter, ATPase subunit (266 aa)
 
  0.992
R2601_20119
ABC transporter, periplasmic substrate binding protein (339 aa)
 
 
  0.973
R2601_02443
ABC transporter ATP-binding protein (281 aa)
 
  0.933
R2601_02383
ABC transporter, nucleotide binding/ATPase protein (Nitrate) (249 aa)
 
  0.889
R2601_21557
ABC transporter ATP-binding protein (272 aa)
 
  0.887
R2601_05188
ABC transporter related protein (265 aa)
 
  0.883
R2601_11804
ABC transporter, ATP-binding protein (267 aa)
 
  0.859
R2601_05183
Uncharacterized protein (329 aa)
 
 
  0.829
R2601_02453
Uncharacterized protein (345 aa)
 
   
    0.813
R2601_11784
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components TauA (330 aa)
 
 
  0.811
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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