STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU47695.1COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase). (506 aa)    
Predicted Functional Partners:
EAU47696.1
ParA family ATPase; COG1192 ATPases involved in chromosome partitioning.
 
     0.937
EAU47697.1
COG2954 Uncharacterized protein conserved in bacteria.
 
     0.846
EAU43382.1
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative; COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase.
    
  0.657
EAU43455.1
Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase; COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase; In the N-terminal section; belongs to the DHBP synthase family.
    
  0.657
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.491
EAU45923.1
Putative malonate transporter, mdcF, AEC family protein; COG0679 Predicted permeases.
  
     0.456
EAU45039.1
Sensor histidine kinase with multiple PAS and a response regulator receiver domain; COG2202 FOG: PAS/PAC domain.
 
  
 0.421
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
   
 0.416
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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