STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dapPutative D-alanyl-D-alanine carboxypeptidase; Hydrolyzes N-terminal residues in D-amino acid-containing peptides; Belongs to the peptidase S12 family. (520 aa)    
Predicted Functional Partners:
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
     
  0.689
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.636
EAU47467.1
beta-N-acetylhexosaminidase, putative; COG1472 Beta-glucosidase-related glycosidases.
  
 
 0.585
EAU45902.1
Hypothetical protein.
  
     0.570
EAU45841.1
Alkaline phosphatase; COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases.
    
  0.525
EAU45482.1
Non-ribosomal peptide synthetase; COG0223 Methionyl-tRNA formyltransferase.
  
  
 0.494
EAU48293.1
Peptidase, M19 family protein; COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog.
  
    0.480
EAU44487.1
Renal dipeptidase family protein; COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog.
  
    0.480
EAU47355.1
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
     
 0.448
EAU47706.1
Hypothetical protein.
       0.442
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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