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R2601_20316 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20316" - ABC sugar transporter, inner membrane subunit in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20316ABC sugar transporter, inner membrane subunit (356 aa)    
Predicted Functional Partners:
R2601_20311
ABC transporter, nucleotide binding/ATPase protein (Sugar) (259 aa)
 
  0.998
R2601_20321
ABC sugar transporter, periplasmic sugar binding subunit (331 aa)
   
  0.990
R2601_17479
Ribose import ATP-binding protein RbsA ; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system (513 aa)
 
  0.978
R2601_02658
ABC transporter, nucleotide binding/ATPase protein (Sugar) (498 aa)
 
  0.978
R2601_01993
Ribose import ATP-binding protein RbsA ; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system (500 aa)
 
  0.978
R2601_00180
ABC sugar transporter, ATPase subunit (501 aa)
 
  0.977
R2601_05753
Xylose ABC transporter, ATP-binding protein (517 aa)
 
  0.962
R2601_01130
Ribose ABC transporter, ATP-binding protein (515 aa)
 
  0.952
R2601_01120
Probable ABC transporter sugar-binding protein (315 aa)
 
  0.937
R2601_00940
Periplasmic binding protein/LacI transcriptional regulator (316 aa)
 
  0.937
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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