STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU45846.1Hypothetical protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component. (181 aa)    
Predicted Functional Partners:
EAU45844.1
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
 
     0.954
EAU45842.1
COG3395 Uncharacterized protein conserved in bacteria.
 
     0.948
EAU45847.1
Putative periplasmic substrate-binding protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.947
EAU45843.1
COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit; Belongs to the RuBisCO large chain family.
 
     0.929
EAU45845.1
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
  0.888
EAU45848.1
Hypothetical protein; COG1609 Transcriptional regulators.
 
     0.865
EAU46178.1
COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.710
EAU43774.1
Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.570
EAU46773.1
TRAP-T family transporter, DctP (periplasmic binding) subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.524
EAU47255.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.523
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.