STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU47387.1Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (320 aa)    
Predicted Functional Partners:
EAU47175.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family protein; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.565
hisD-2
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
       0.546
EAU46319.1
Hypothetical protein.
  
     0.468
EAU44449.1
Hypothetical protein.
  
     0.460
EAU47452.1
Methyltransferase, FkbM family protein; COG0500 SAM-dependent methyltransferases.
  
     0.460
EAU48180.1
Hypothetical protein.
  
     0.459
EAU46338.1
Antibiotic biosynthesis monooxygenase domain protein; COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides.
  
     0.455
EAU45378.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.448
EAU47524.1
Hypothetical protein; COG4335 DNA alkylation repair enzyme.
  
     0.446
EAU47449.1
Hypothetical protein.
  
     0.430
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.