Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAU45614.1Hypothetical protein. (249 aa)    
Predicted Functional Partners:
EAU45615.1
Hypothetical protein.
 
     0.890
EAU47450.1
Hypothetical protein.
  
     0.750
EAU47451.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.727
EAU47449.1
Hypothetical protein.
  
     0.676
EAU46994.1
Hypothetical protein; COG1933 Archaeal DNA polymerase II, large subunit.
  
     0.640
EAU46733.1
Lipoprotein, putative.
  
     0.632
EAU45990.1
Hypothetical protein.
  
     0.616
EAU45989.1
Hypothetical protein.
  
     0.586
EAU44915.1
Hypothetical protein.
  
     0.576
EAU44676.1
Possible flagellar switch protein FliM.
  
     0.562
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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