STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU45078.1Hypothetical protein. (124 aa)    
Predicted Functional Partners:
EAU43676.1
lysM domain protein; COG1652 Uncharacterized protein containing LysM domain.
  
 
 0.960
EAU45082.1
Prophage LambdaW1, terminase large subunit, putative; COG5525 Bacteriophage tail assembly protein.
 
  
 0.959
EAU45077.1
Hypothetical protein.
 
     0.909
EAU45080.1
COG5511 Bacteriophage capsid protein.
 
     0.909
EAU45079.1
COG0616 Periplasmic serine proteases (ClpP class).
 
    0.904
EAU43926.1
Prophage LambdaW4, terminase large subunit, putative; COG5525 Bacteriophage tail assembly protein.
 
  
 0.898
EAU45074.1
Hypothetical protein.
 
     0.866
EAU45072.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
 
     0.850
EAU45073.1
Hypothetical protein; COG1012 NAD-dependent aldehyde dehydrogenases.
 
     0.847
EAU45083.1
Hypothetical protein.
  
  
 0.829
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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